HL_4U25_223

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

4U25|1|DA|U|546, 4U25|1|DA|A|547, 4U25|1|DA|G|548, 4U25|1|DA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_223 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2672

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4U25|1|DA|C|542
4U25|1|DA|G|543
4U25|1|DA|C|544
4U25|1|DA|U|545
4U25|1|DA|U|546
4U25|1|DA|A|547
4U25|1|DA|G|548
4U25|1|DA|G|549
4U25|1|DA|C|550
4U25|1|DA|G|551

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DR

50S ribosomal protein L21