HL_4U25_225

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

4U25|1|DB|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_225 not in the Motif Atlas

Homologous match to HL_5J7L_215

Geometric discrepancy: 0.1117

The information below is about HL_5J7L_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4U25|1|DB|A|34
4U25|1|DB|C|35
4U25|1|DB|C|36
4U25|1|DB|C|37
4U25|1|DB|C|38
4U25|1|DB|A|39
4U25|1|DB|U|40
4U25|1|DB|G|41
4U25|1|DB|C|42
4U25|1|DB|C|43
4U25|1|DB|G|44
4U25|1|DB|A|45
4U25|1|DB|A|46
4U25|1|DB|C|47
4U25|1|DB|U|48

Current chains

Chain DB

5S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DF

50S ribosomal protein L5

Chain DO

50S ribosomal protein L18