HL_4U26_018

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4U26|1|AA|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U26_018 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.232

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4U26|1|AA|C|839
4U26|1|AA|C|840
4U26|1|AA|C|841
4U26|1|AA|U|842
4U26|1|AA|U|843
4U26|1|AA|G|844
4U26|1|AA|A|845
4U26|1|AA|G|846
4U26|1|AA|G|847

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18

Chain CB

30S ribosomal protein S2