HL_4U26_045

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4U26|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U26_045 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0738

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4U26|1|BA|G|410
4U26|1|BA|G|411
4U26|1|BA|A|412
4U26|1|BA|C|413
4U26|1|BA|C|414
4U26|1|BA|A|415
4U26|1|BA|U|416
4U26|1|BA|C|417

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15