HL_4U26_168

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U26_168 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.398

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4U26|1|DA|C|1362
4U26|1|DA|C|1363
4U26|1|DA|G|1364
4U26|1|DA|A|1365
4U26|1|DA|A|1366
4U26|1|DA|A|1367
4U26|1|DA|G|1368
4U26|1|DA|G|1369

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DX

50S ribosomal protein L28