3D structure

PDB id
4U27 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
4U27|1|BA|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U27_041 not in the Motif Atlas
Homologous match to HL_5J7L_142
Geometric discrepancy: 0.0701
The information below is about HL_5J7L_142
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

4U27|1|BA|C|305
4U27|1|BA|U|306
4U27|1|BA|G|307
4U27|1|BA|G|308
4U27|1|BA|A|309
4U27|1|BA|A|310
4U27|1|BA|A|311
4U27|1|BA|G|312

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BU
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2868 s