HL_4U27_213

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

4U27|1|BA|C|1493, 4U27|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U27_213 not in the Motif Atlas

Geometric match to HL_2A43_001

Geometric discrepancy: 0.3469

The information below is about HL_2A43_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4U27|1|BA|G|1491
4U27|1|BA|G|1492
4U27|1|BA|C|1493
4U27|1|BA|A|1494
4U27|1|BA|A|1495
4U27|1|BA|A|1496
4U27|1|BA|U|1497
4U27|1|BA|C|1498
4U27|1|BA|C|1499

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2