HL_4U3M_238

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

4U3M|1|5|A|2540, 4U3M|1|5|U|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3M_238 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2684

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4U3M|1|5|A|2535
4U3M|1|5|A|2536
4U3M|1|5|U|2537
4U3M|1|5|U|2538
4U3M|1|5|C|2539
4U3M|1|5|A|2540
4U3M|1|5|U|2541
4U3M|1|5|U|2542
4U3M|1|5|U|2543
4U3M|1|5|U|2544

Current chains

Chain 5

25s rRNA

Nearby chains

Chain l8

60S ribosomal protein L8-A

Chain s1

40S ribosomal protein S1-A