HL_4U3U_055

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4U3U|1|1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_055 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.0552

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4U3U|1|1|C|2616
4U3U|1|1|U|2617
4U3U|1|1|G|2618
4U3U|1|1|G|2619
4U3U|1|1|G|2620
4U3U|1|1|G|2621
4U3U|1|1|C|2622
4U3U|1|1|G|2623
4U3U|1|1|G|2624

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

60S ribosomal protein L10

Chain N9

60S ribosomal protein L29