HL_4U3U_106

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

4U3U|1|2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_106 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.0867

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U3U|1|2|G|1594
4U3U|1|2|U|1595
4U3U|1|2|C|1596
4U3U|1|2|A|1597
4U3U|1|2|U|1598
4U3U|1|2|C|1599
4U3U|1|2|A|1600
4U3U|1|2|G|1601
4U3U|1|2|C|1602

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20

Chain D9

40S ribosomal protein S29-A