3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CCAAGG
Length
6 nucleotides
Bulged bases
4U3U|1|6|A|416
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3U_196 not in the Motif Atlas
Homologous match to HL_4V88_196
Geometric discrepancy: 0.0872
The information below is about HL_4V88_196
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

4U3U|1|6|C|414
4U3U|1|6|C|415
4U3U|1|6|A|416
4U3U|1|6|A|417
4U3U|1|6|G|418
4U3U|1|6|G|419

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain n3
60S ribosomal protein L23-A
Chain s6
40S ribosomal protein S6-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.149 s