HL_4U3U_214

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_214 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.0434

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4U3U|1|6|A|1296
4U3U|1|6|G|1297
4U3U|1|6|U|1298
4U3U|1|6|G|1299
4U3U|1|6|A|1300
4U3U|1|6|U|1301

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s0

40S ribosomal protein S0-A

Chain s2

40S ribosomal protein S2