HL_4U4N_202

3D structure

PDB id

4U4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Edeine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

4U4N|1|6|G|660

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4N_202 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.242

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4U4N|1|6|G|656
4U4N|1|6|U|657
4U4N|1|6|C|658
4U4N|1|6|C|659
4U4N|1|6|G|660
4U4N|1|6|A|661
4U4N|1|6|U|662
4U4N|1|6|U|663
4U4N|1|6|U|664
4U4N|1|6|U|665
4U4N|1|6|U|666
4U4N|1|6|U|667
4U4N|1|6|C|668
4U4N|1|6|G|669
4U4N|1|6|U|670
4U4N|1|6|A|673
4U4N|1|6|C|674

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A