HL_4U4O_142

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGUAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4O_142 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3587

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4U4O|1|5|C|1402
4U4O|1|5|C|1403
4U4O|1|5|G|1404
4U4O|1|5|U|1405
4U4O|1|5|A|1406
4U4O|1|5|A|1407
4U4O|1|5|G|1408
4U4O|1|5|G|1409

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o2

60S ribosomal protein L32