HL_4U4O_242

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4O_242 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.5449

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|5|G|542
4U4O|1|5|C|543
4U4O|1|5|C|544
4U4O|1|5|U|545
4U4O|1|5|C|546
4U4O|1|5|G|547
4U4O|1|5|G|548
4U4O|1|5|U|549

Current chains

Chain 5

25S ribosomal RNA

Nearby chains