HL_4U4O_244

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGGAUGAACCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|5|C|1146
4U4O|1|5|G|1147
4U4O|1|5|G|1148
4U4O|1|5|G|1149
4U4O|1|5|A|1150
4U4O|1|5|U|1151
4U4O|1|5|G|1152
4U4O|1|5|A|1153
4U4O|1|5|A|1154
4U4O|1|5|C|1155
4U4O|1|5|C|1156
4U4O|1|5|G|1157

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain l7

60S ribosomal protein L7-A

Chain o2

60S ribosomal protein L32

Chain o3

60S ribosomal protein L33-A