HL_4U4O_246

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AAAUGAGAACUUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|5|A|1460
4U4O|1|5|A|1461
4U4O|1|5|A|1462
4U4O|1|5|U|1463
4U4O|1|5|G|1464
4U4O|1|5|A|1465
4U4O|1|5|G|1466
4U4O|1|5|A|1467
4U4O|1|5|A|1468
4U4O|1|5|C|1469
4U4O|1|5|U|1470
4U4O|1|5|U|1471
4U4O|1|5|U|1472

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m7

60S ribosomal protein L17-A

Chain m9

60S ribosomal protein L19-A

Chain o1

60S ribosomal protein L31-A