HL_4U4Q_213

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUGAGAGCUC

Length

12 nucleotides

Bulged bases

4U4Q|1|6|G|1243, 4U4Q|1|6|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Q|1|6|G|1237
4U4Q|1|6|A|1238
4U4Q|1|6|U|1239
4U4Q|1|6|U|1240
4U4Q|1|6|G|1241
4U4Q|1|6|A|1242
4U4Q|1|6|G|1243
4U4Q|1|6|A|1244
4U4Q|1|6|G|1245
4U4Q|1|6|C|1246
4U4Q|1|6|U|1247
4U4Q|1|6|C|1248

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31