HL_4U4R_086

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4R_086 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.0621

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4U4R|1|2|A|520
4U4R|1|2|A|521
4U4R|1|2|U|522
4U4R|1|2|G|523
4U4R|1|2|U|524
4U4R|1|2|A|525
4U4R|1|2|A|526
4U4R|1|2|A|527
4U4R|1|2|U|528
4U4R|1|2|A|529
4U4R|1|2|C|530
4U4R|1|2|C|531
4U4R|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S9

40S ribosomal protein S9-A