HL_4U4R_231

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UCUUCGGA

Length

8 nucleotides

Bulged bases

4U4R|1|2|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4R_231 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3281

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4U4R|1|2|U|229
4U4R|1|2|C|230
4U4R|1|2|U|231
4U4R|1|2|U|232
4U4R|1|2|C|233
4U4R|1|2|G|234
4U4R|1|2|G|235
4U4R|1|2|A|236

Current chains

Chain 2

18S ribosomal RNA

Nearby chains