HL_4U4R_239

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGGGCCCAUUCGGGUCUUG

Length

20 nucleotides

Bulged bases

4U4R|1|6|C|489, 4U4R|1|6|U|493, 4U4R|1|6|U|494, 4U4R|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4R|1|6|C|484
4U4R|1|6|A|485
4U4R|1|6|G|486
4U4R|1|6|G|487
4U4R|1|6|G|488
4U4R|1|6|C|489
4U4R|1|6|C|490
4U4R|1|6|C|491
4U4R|1|6|A|492
4U4R|1|6|U|493
4U4R|1|6|U|494
4U4R|1|6|C|495
4U4R|1|6|G|496
4U4R|1|6|G|497
4U4R|1|6|G|498
4U4R|1|6|U|499
4U4R|1|6|C|500
4U4R|1|6|U|501
4U4R|1|6|U|502
4U4R|1|6|G|503

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A