HL_4U4U_088

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4U4U|1|2|U|718, 4U4U|1|2|U|719, 4U4U|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4U|1|2|G|703
4U4U|1|2|C|704
4U4U|1|2|U|705
4U4U|1|2|A|706
4U4U|1|2|A|707
4U4U|1|2|C|708
4U4U|1|2|C|709
4U4U|1|2|U|710
4U4U|1|2|U|711
4U4U|1|2|G|712
4U4U|1|2|A|713
4U4U|1|2|G|714
4U4U|1|2|U|715
4U4U|1|2|C|716
4U4U|1|2|C|717
4U4U|1|2|U|718
4U4U|1|2|U|719
4U4U|1|2|G|720
4U4U|1|2|U|721
4U4U|1|2|G|722
4U4U|1|2|G|723
4U4U|1|2|C|724
4U4U|1|2|U|725
4U4U|1|2|C|726
4U4U|1|2|U|727
4U4U|1|2|U|728
4U4U|1|2|G|729
4U4U|1|2|G|730
4U4U|1|2|C|731
4U4U|1|2|G|732
4U4U|1|2|A|733
4U4U|1|2|A|734
4U4U|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A