HL_4U4U_119
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 4U4U|1|5|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4U_119 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.0611
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
4U4U|1|5|U|194
4U4U|1|5|U|195
4U4U|1|5|G|196
4U4U|1|5|G|197
4U4U|1|5|A|198
4U4U|1|5|A|199
4U4U|1|5|C|200
4U4U|1|5|A|201
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain n6
- 60S ribosomal protein L26-A
- Chain o2
- 60S ribosomal protein L32
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