HL_4U4U_186

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4U_186 not in the Motif Atlas

Homologous match to HL_8C3A_072

Geometric discrepancy: 0.2476

The information below is about HL_8C3A_072

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

4U4U|1|5|C|3350
4U4U|1|5|U|3351
4U4U|1|5|U|3352
4U4U|1|5|G|3353

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A