HL_4U4U_234

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

4U4U|1|2|U|779, 4U4U|1|2|U|781, 4U4U|1|2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4U_234 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3495

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4U4U|1|2|G|776
4U4U|1|2|C|777
4U4U|1|2|G|778
4U4U|1|2|U|779
4U4U|1|2|A|780
4U4U|1|2|U|781
4U4U|1|2|U|782
4U4U|1|2|G|783
4U4U|1|2|C|784

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A