HL_4U4Y_053

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_053 not in the Motif Atlas

Homologous match to HL_5TBW_053

Geometric discrepancy: 0.2995

The information below is about HL_5TBW_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24079.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4U4Y|1|1|C|2568
4U4Y|1|1|A|2569
4U4Y|1|1|U|2570
4U4Y|1|1|U|2571
4U4Y|1|1|C|2572
4U4Y|1|1|G|2573

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N7

60S ribosomal protein L27-A