HL_4U4Y_087

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4U4Y|1|2|U|718, 4U4Y|1|2|U|719, 4U4Y|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|2|G|703
4U4Y|1|2|C|704
4U4Y|1|2|U|705
4U4Y|1|2|A|706
4U4Y|1|2|A|707
4U4Y|1|2|C|708
4U4Y|1|2|C|709
4U4Y|1|2|U|710
4U4Y|1|2|U|711
4U4Y|1|2|G|712
4U4Y|1|2|A|713
4U4Y|1|2|G|714
4U4Y|1|2|U|715
4U4Y|1|2|C|716
4U4Y|1|2|C|717
4U4Y|1|2|U|718
4U4Y|1|2|U|719
4U4Y|1|2|G|720
4U4Y|1|2|U|721
4U4Y|1|2|G|722
4U4Y|1|2|G|723
4U4Y|1|2|C|724
4U4Y|1|2|U|725
4U4Y|1|2|C|726
4U4Y|1|2|U|727
4U4Y|1|2|U|728
4U4Y|1|2|G|729
4U4Y|1|2|G|730
4U4Y|1|2|C|731
4U4Y|1|2|G|732
4U4Y|1|2|A|733
4U4Y|1|2|A|734
4U4Y|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A