HL_4U4Y_135

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUCGAAAUGACC

Length

13 nucleotides

Bulged bases

4U4Y|1|5|A|1025, 4U4Y|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|5|G|1020
4U4Y|1|5|G|1021
4U4Y|1|5|U|1022
4U4Y|1|5|C|1023
4U4Y|1|5|G|1024
4U4Y|1|5|A|1025
4U4Y|1|5|A|1026
4U4Y|1|5|A|1027
4U4Y|1|5|U|1028
4U4Y|1|5|G|1029
4U4Y|1|5|A|1030
4U4Y|1|5|C|1031
4U4Y|1|5|C|1032

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain e1

Ubiquitin-40S ribosomal protein S31

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1