HL_4U4Y_146

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUGAUUUUAUGCAGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|5|C|1562
4U4Y|1|5|C|1563
4U4Y|1|5|U|1564
4U4Y|1|5|G|1565
4U4Y|1|5|A|1566
4U4Y|1|5|U|1567
4U4Y|1|5|U|1568
4U4Y|1|5|U|1569
4U4Y|1|5|U|1570
4U4Y|1|5|A|1571
4U4Y|1|5|U|1572
4U4Y|1|5|G|1573
4U4Y|1|5|C|1574
4U4Y|1|5|A|1575
4U4Y|1|5|G|1576
4U4Y|1|5|G|1577

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain l8

60S ribosomal protein L8-A

Chain n5

60S ribosomal protein L25