HL_4U4Y_169
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AACAGAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4Y_169 not in the Motif Atlas
- Homologous match to HL_5TBW_056
- Geometric discrepancy: 0.1445
- The information below is about HL_5TBW_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_72777.1
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4U4Y|1|5|A|2673
4U4Y|1|5|A|2674
4U4Y|1|5|C|2675
4U4Y|1|5|A|2676
4U4Y|1|5|G|2677
4U4Y|1|5|A|2678
4U4Y|1|5|A|2679
4U4Y|1|5|A|2680
4U4Y|1|5|U|2681
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m1
- 60S ribosomal protein L11-B
- Chain sM
- Suppressor protein STM1
Coloring options: