HL_4U4Y_232

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UACAAUGUAAAUACCUUAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|2|U|517
4U4Y|1|2|A|518
4U4Y|1|2|C|519
4U4Y|1|2|A|520
4U4Y|1|2|A|521
4U4Y|1|2|U|522
4U4Y|1|2|G|523
4U4Y|1|2|U|524
4U4Y|1|2|A|525
4U4Y|1|2|A|526
4U4Y|1|2|A|527
4U4Y|1|2|U|528
4U4Y|1|2|A|529
4U4Y|1|2|C|530
4U4Y|1|2|C|531
4U4Y|1|2|U|532
4U4Y|1|2|U|533
4U4Y|1|2|A|534
4U4Y|1|2|A|535

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S9

40S ribosomal protein S9-A