HL_4U4Y_234
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4Y_234 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.1039
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4U4Y|1|3|U|32
4U4Y|1|3|U|33
4U4Y|1|3|C|34
4U4Y|1|3|C|35
4U4Y|1|3|C|36
4U4Y|1|3|G|37
4U4Y|1|3|U|38
4U4Y|1|3|C|39
4U4Y|1|3|C|40
4U4Y|1|3|G|41
4U4Y|1|3|A|42
4U4Y|1|3|U|43
4U4Y|1|3|C|44
4U4Y|1|3|A|45
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- 60S ribosomal protein L5
- Chain M1
- 60S ribosomal protein L11-B
- Chain SM
- Suppressor protein STM1
Coloring options: