HL_4U4Z_085

3D structure

PDB id

4U4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUACAGGGCCCAUUCGGGUCUUGUAAUUG

Length

31 nucleotides

Bulged bases

4U4Z|1|2|C|495, 4U4Z|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Z|1|2|C|479
4U4Z|1|2|G|480
4U4Z|1|2|A|481
4U4Z|1|2|U|482
4U4Z|1|2|A|483
4U4Z|1|2|C|484
4U4Z|1|2|A|485
4U4Z|1|2|G|486
4U4Z|1|2|G|487
4U4Z|1|2|G|488
4U4Z|1|2|C|489
4U4Z|1|2|C|490
4U4Z|1|2|C|491
4U4Z|1|2|A|492
4U4Z|1|2|U|493
4U4Z|1|2|U|494
4U4Z|1|2|C|495
4U4Z|1|2|G|496
4U4Z|1|2|G|497
4U4Z|1|2|G|498
4U4Z|1|2|U|499
4U4Z|1|2|C|500
4U4Z|1|2|U|501
4U4Z|1|2|U|502
4U4Z|1|2|G|503
4U4Z|1|2|U|504
4U4Z|1|2|A|505
4U4Z|1|2|A|506
4U4Z|1|2|U|507
4U4Z|1|2|U|508
4U4Z|1|2|G|509

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A