HL_4U4Z_234
3D structure
- PDB id
- 4U4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Phyllanthoside bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUGAUUUUAUGCAGGC
- Length
- 18 nucleotides
- Bulged bases
- 4U4Z|1|5|U|1569, 4U4Z|1|5|U|1570, 4U4Z|1|5|G|1573
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4Z_234 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.398
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U4Z|1|5|G|1561
4U4Z|1|5|C|1562
4U4Z|1|5|C|1563
4U4Z|1|5|U|1564
4U4Z|1|5|G|1565
4U4Z|1|5|A|1566
4U4Z|1|5|U|1567
4U4Z|1|5|U|1568
4U4Z|1|5|U|1569
4U4Z|1|5|U|1570
4U4Z|1|5|A|1571
4U4Z|1|5|U|1572
4U4Z|1|5|G|1573
4U4Z|1|5|C|1574
4U4Z|1|5|A|1575
4U4Z|1|5|G|1576
4U4Z|1|5|G|1577
4U4Z|1|5|C|1578
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A
- Chain n5
- 60S ribosomal protein L25
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