HL_4U50_088

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4U50|1|2|U|718, 4U50|1|2|U|719, 4U50|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U50|1|2|G|703
4U50|1|2|C|704
4U50|1|2|U|705
4U50|1|2|A|706
4U50|1|2|A|707
4U50|1|2|C|708
4U50|1|2|C|709
4U50|1|2|U|710
4U50|1|2|U|711
4U50|1|2|G|712
4U50|1|2|A|713
4U50|1|2|G|714
4U50|1|2|U|715
4U50|1|2|C|716
4U50|1|2|C|717
4U50|1|2|U|718
4U50|1|2|U|719
4U50|1|2|G|720
4U50|1|2|U|721
4U50|1|2|G|722
4U50|1|2|G|723
4U50|1|2|C|724
4U50|1|2|U|725
4U50|1|2|C|726
4U50|1|2|U|727
4U50|1|2|U|728
4U50|1|2|G|729
4U50|1|2|G|730
4U50|1|2|C|731
4U50|1|2|G|732
4U50|1|2|A|733
4U50|1|2|A|734
4U50|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A