HL_4U50_089

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

4U50|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U50_089 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1016

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4U50|1|2|U|764
4U50|1|2|G|765
4U50|1|2|U|766
4U50|1|2|U|767
4U50|1|2|C|768
4U50|1|2|A|769
4U50|1|2|A|770
4U50|1|2|A|771
4U50|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A