3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGUUCAAAG
Length
9 nucleotides
Bulged bases
4U50|1|2|G|765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_089 not in the Motif Atlas
Homologous match to HL_4V88_203
Geometric discrepancy: 0.1016
The information below is about HL_4V88_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

4U50|1|2|U|764
4U50|1|2|G|765
4U50|1|2|U|766
4U50|1|2|U|767
4U50|1|2|C|768
4U50|1|2|A|769
4U50|1|2|A|770
4U50|1|2|A|771
4U50|1|2|G|772

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D4
40S ribosomal protein S24-A
Chain S4
40S ribosomal protein S4-A
Chain S9
40S ribosomal protein S9-A

Coloring options:


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