HL_4U50_145
3D structure
- PDB id
- 4U50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Verrucarin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 4U50|1|5|G|1507, 4U50|1|5|U|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U50_145 not in the Motif Atlas
- Homologous match to HL_5TBW_032
- Geometric discrepancy: 0.0764
- The information below is about HL_5TBW_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
4U50|1|5|A|1506
4U50|1|5|G|1507
4U50|1|5|C|1508
4U50|1|5|A|1509
4U50|1|5|G|1510
4U50|1|5|U|1511
4U50|1|5|U|1512
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m7
- 60S ribosomal protein L17-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain o9
- 60S ribosomal protein L39
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