3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCUGAUUUUAUGCAGG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U50|1|5|C|1562
4U50|1|5|C|1563
4U50|1|5|U|1564
4U50|1|5|G|1565
4U50|1|5|A|1566
4U50|1|5|U|1567
4U50|1|5|U|1568
4U50|1|5|U|1569
4U50|1|5|U|1570
4U50|1|5|A|1571
4U50|1|5|U|1572
4U50|1|5|G|1573
4U50|1|5|C|1574
4U50|1|5|A|1575
4U50|1|5|G|1576
4U50|1|5|G|1577

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain l8
60S ribosomal protein L8-A
Chain n5
60S ribosomal protein L25

Coloring options:

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