HL_4U50_161

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U50_161 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1199

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4U50|1|5|A|2220
4U50|1|5|G|2221
4U50|1|5|A|2222
4U50|1|5|A|2223
4U50|1|5|A|2224
4U50|1|5|U|2225

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o6

60S ribosomal protein L36-A

Chain q2

60S ribosomal protein L42-A