HL_4U50_198

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGGGCCCAUUCGGGUCUUG

Length

20 nucleotides

Bulged bases

4U50|1|6|U|493, 4U50|1|6|U|494, 4U50|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U50|1|6|C|484
4U50|1|6|A|485
4U50|1|6|G|486
4U50|1|6|G|487
4U50|1|6|G|488
4U50|1|6|C|489
4U50|1|6|C|490
4U50|1|6|C|491
4U50|1|6|A|492
4U50|1|6|U|493
4U50|1|6|U|494
4U50|1|6|C|495
4U50|1|6|G|496
4U50|1|6|G|497
4U50|1|6|G|498
4U50|1|6|U|499
4U50|1|6|C|500
4U50|1|6|U|501
4U50|1|6|U|502
4U50|1|6|G|503

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A