HL_4U50_221

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

4U50|1|6|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U50|1|6|A|1691
4U50|1|6|G|1692
4U50|1|6|A|1693
4U50|1|6|A|1694
4U50|1|6|G|1695
4U50|1|6|G|1696
4U50|1|6|G|1697
4U50|1|6|G|1698
4U50|1|6|G|1699
4U50|1|6|C|1700
4U50|1|6|A|1701
4U50|1|6|A|1702
4U50|1|6|C|1703
4U50|1|6|U|1704
4U50|1|6|C|1705
4U50|1|6|C|1706
4U50|1|6|A|1707
4U50|1|6|U|1708
4U50|1|6|C|1709
4U50|1|6|U|1710

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A