HL_4U50_232

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCUUGUGC

Length

9 nucleotides

Bulged bases

4U50|1|2|U|277, 4U50|1|2|U|278, 4U50|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U50_232 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.226

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4U50|1|2|G|274
4U50|1|2|C|275
4U50|1|2|C|276
4U50|1|2|U|277
4U50|1|2|U|278
4U50|1|2|G|279
4U50|1|2|U|280
4U50|1|2|G|281
4U50|1|2|C|282

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A