HL_4U51_071

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

4U51|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U51_071 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.0656

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4U51|1|1|G|3303
4U51|1|1|U|3304
4U51|1|1|A|3305
4U51|1|1|U|3306
4U51|1|1|A|3307
4U51|1|1|C|3308
4U51|1|1|G|3309
4U51|1|1|A|3310
4U51|1|1|C|3311

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M7

60S ribosomal protein L17-A