HL_4U51_244

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

4U51|1|1|U|545, 4U51|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U51_244 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.4022

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13189.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4U51|1|1|C|543
4U51|1|1|C|544
4U51|1|1|U|545
4U51|1|1|C|546
4U51|1|1|G|547
4U51|1|1|G|548

Current chains

Chain 1

25S ribosomal RNA

Nearby chains