HL_4U51_249

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U51_249 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.1535

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U51|1|6|A|829
4U51|1|6|U|830
4U51|1|6|U|831
4U51|1|6|U|832
4U51|1|6|U|833
4U51|1|6|G|834
4U51|1|6|U|835
4U51|1|6|U|836
4U51|1|6|G|837
4U51|1|6|G|838
4U51|1|6|U|839
4U51|1|6|U|840
4U51|1|6|U|841
4U51|1|6|C|842
4U51|1|6|U|843

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A