HL_4U52_032

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4U52|1|1|G|1507, 4U52|1|1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_032 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.0542

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4U52|1|1|A|1506
4U52|1|1|G|1507
4U52|1|1|C|1508
4U52|1|1|A|1509
4U52|1|1|G|1510
4U52|1|1|U|1511
4U52|1|1|U|1512

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M7

60S ribosomal protein L17-A

Chain M9

60S ribosomal protein L19-A