HL_4U52_071
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUAUACGAC
- Length
- 9 nucleotides
- Bulged bases
- 4U52|1|1|U|3304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U52_071 not in the Motif Atlas
- Geometric match to HL_5TBW_070
- Geometric discrepancy: 0.0432
- The information below is about HL_5TBW_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.4
- Basepair signature
- cWW-cSW-F-F-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
4U52|1|1|G|3303
4U52|1|1|U|3304
4U52|1|1|A|3305
4U52|1|1|U|3306
4U52|1|1|A|3307
4U52|1|1|C|3308
4U52|1|1|G|3309
4U52|1|1|A|3310
4U52|1|1|C|3311
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain M7
- 60S ribosomal protein L17-A
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