HL_4U52_087

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4U52|1|2|U|718, 4U52|1|2|U|719, 4U52|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|2|G|703
4U52|1|2|C|704
4U52|1|2|U|705
4U52|1|2|A|706
4U52|1|2|A|707
4U52|1|2|C|708
4U52|1|2|C|709
4U52|1|2|U|710
4U52|1|2|U|711
4U52|1|2|G|712
4U52|1|2|A|713
4U52|1|2|G|714
4U52|1|2|U|715
4U52|1|2|C|716
4U52|1|2|C|717
4U52|1|2|U|718
4U52|1|2|U|719
4U52|1|2|G|720
4U52|1|2|U|721
4U52|1|2|G|722
4U52|1|2|G|723
4U52|1|2|C|724
4U52|1|2|U|725
4U52|1|2|C|726
4U52|1|2|U|727
4U52|1|2|U|728
4U52|1|2|G|729
4U52|1|2|G|730
4U52|1|2|C|731
4U52|1|2|G|732
4U52|1|2|A|733
4U52|1|2|A|734
4U52|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A