HL_4U52_102

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

4U52|1|2|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_102 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3085

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

4U52|1|2|U|1396
4U52|1|2|U|1397
4U52|1|2|U|1398
4U52|1|2|C|1399
4U52|1|2|A|1400
4U52|1|2|A|1401
4U52|1|2|G|1402

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A