HL_4U52_112

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

4U52|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_112 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.0823

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4U52|1|4|G|124
4U52|1|4|U|125
4U52|1|4|A|126
4U52|1|4|U|127
4U52|1|4|U|128
4U52|1|4|C|129

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA